PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004503514.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 385aa    MW: 42904 Da    PI: 7.0835
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004503514.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.91.8e-08129149526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C++f++ G Ck Gd+C FaHg
  XP_004503514.1 129 ACPDFRK-GSCKKGDSCEFAHG 149
                     7******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.0E-6124150IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.854125151IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-6129149IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5129151IPR000571Zinc finger, CCCH-type
SMARTSM0035623159182IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.211159183IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MSMMLGEPPH RTNPTIHVPP WQMMSDSTAE IFSPLTTNDD YSPYYLQEAL SALQHYIPSN  60
EHDDDSDSDA IPSHESVDVY SCDNFRMFEF KIRRCARGRS HDWTECPYAH PGEKARRRDP  120
RKFHYSGTAC PDFRKGSCKK GDSCEFAHGV FECWLHPARY RTQPCKDGTS CRRRVCFFAH  180
TSEQLRTPTQ QSPRSVNSTD SYDGSPLRLA IESSCVKSLP FMSSPGSVSP PVESPPMSPL  240
TSSLGRSFGF GSVNVNEMVV SLRNLQLGKM KSLPSSWNVQ MGSPRFGSPR GPVIRPGFCS  300
LPTTPTQTPN RSGVNHFDLW DQRCEEEPAM ERVESGRDIR VKMFEKLSKE NSLDRSGLGS  360
GSGSGQVDGA PDVGWVSELV SPFLG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ2121730.0FJ212173.1 Cicer arietinum zinc finger protein ZF3 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004503514.10.0PREDICTED: zinc finger CCCH domain-containing protein 20
SwissprotQ9M0G21e-133C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLE1U3U60.0E1U3U6_CICAR; Zinc finger protein ZF3
STRINGGLYMA08G03540.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-129C3H family protein